I'm assuming you just fiddled with the upper butterflies since the lowers are well below them and hidden?
The upper/secondary butterflies have their own TPS so shouldn't have messed with the primary TPS at all and moving the butterflies shouldn't effect either unless they're forced beyond the range limit, which you'd know about.
The process outlined in the service manual even mentions moving the secondary butterflies by hand for balancing them to each other, I've done this on my Vee and can testify that it's (a) pretty pointless and (b) doesn't mess with either TPS.
More likely your issue is with the fast idle system in the cold. The bike should fire up and jump to around 2,000rpm in this weather, dropping to maybe 1,750 at 1 bar of temperature and then finally going to your set idle a while after 2 bars are reached.
Mine was out when I bought the bike and it ran fine all summer but then would die back and stall in winter until I sorted the fast idle, been perfect ever since.
* If your fast idle is currently operating fine then the above is no help

Does it fast idle properly or was the bike up to temp when you experienced the issue?
** Yes it is possible to calibrate the TPS and it's fairly easy to do, lots of videos on YouTube and it's also outlined in the K9 service manual in the downloads area.
https://www.v-strom.co.uk/downloads/DL650AK9ServiceManual.pdfYou will need to jumper the dealer mode connector to do this. Either the YouTube video will tell you which pins to short or someone who's memory is better than mine will be along shortly to tell you which
